NEWS

CHANGES IN VERSION 0.99.30
------------------------
 o ViSEAGO citation update

CHANGES IN VERSION 0.99.32
------------------------
 o GOterms_heatmap GO.clusters column convert to character in order to prevent data.table merge error.

CHANGES IN VERSION 0.99.33
------------------------
 o merge_enrich_terms exemple update.

CHANGES IN VERSION 0.99.34
------------------------
 o README update (download from Bioconductor and forgeMIA gitlab)
 o add require("topGO") in create_topGOdata method

CHANGES IN VERSION 0.99.35
------------------------
 o README update

CHANGES IN VERSION 0.99.36
------------------------
 o annotate id argument signature with "NULL"

CHANGES IN VERSION 0.99.37
------------------------
 o add environment option for merge_enrich_terms

CHANGES IN VERSION 0.99.38
------------------------
 o show method for GO_cluster print bug correction

CHANGES IN VERSION 0.99.39
------------------------
 o check gene background in merge_enrich_terms upgrade

CHANGES IN VERSION 0.99.40
------------------------
 o add attachNamespace("topGO") instead require("topGO") in create_topGOdata method for prevent build check warnings

CHANGES IN VERSION 0.99.41
------------------------
 o keep require("topGO") in create_topGOdata method

CHANGES IN VERSION 0.99.42
------------------------
 o remove environment signature in merge_enrich_terms

CHANGES IN VERSION 1.0.0
------------------------
 o master branch of Bioconductor

CHANGES IN VERSION 1.2
------------------------
 o add gene_symbol field for Custom2GO
 o patch for Custom gene_symbols on merge_enrich_terms
 o set esummary to 400 terms (instead of 500) by querying on merge_enrich_terms
 o add gene frequency hover text on GOterms_heatmap
 o add custom heatmap colors on GOterms_heatmap
 o showIC print patch on GOterms_heatmap
 o GO count update
 o Uniprot2GO connection method update
 o prevent bioconductor errors when check examples
 o annotate upgrade
 o merge_enrich_terms upgrade for custom

CHANGES IN VERSION 1.3
------------------------
 o print graph with orca
 o Ensembl2GO() biomart update
 o show_heatmap() upgrade
 o upset print update
 o merge_enrich_terms upgrade pvalue cutoff
 o merge_enrich_terms globale upgrade
 o GOterms_heatmap remove row side colors text and correct showIC column
 o vignettes update
 o annotate() update for uniprot
 o fgsea support

CHANGES IN VERSION 1.7
------------------------
 o Ensembl2GO() biomart update