Release 1.14, added check input script, modified Snakefile so that Syri...
Release 1.14, added check input script, modified Snakefile so that Syri inherits ragtag minimap options
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- Snakefile 13 additions, 2 deletionsSnakefile
- config.yaml 5 additions, 1 deletionconfig.yaml
- scripts/CheckFasta.cpp 88 additions, 0 deletionsscripts/CheckFasta.cpp
- scripts/CheckFasta.so 0 additions, 0 deletionsscripts/CheckFasta.so
- scripts/Syri.figs_mm2.sh 12 additions, 4 deletionsscripts/Syri.figs_mm2.sh
- scripts/check_input.py 184 additions, 0 deletionsscripts/check_input.py
- scripts/check_input_utils.py 276 additions, 0 deletionsscripts/check_input_utils.py
- scripts/generate_config.py 71 additions, 0 deletionsscripts/generate_config.py
- scripts/generate_script.py 47 additions, 0 deletionsscripts/generate_script.py
- scripts/make_table.sh 38 additions, 0 deletionsscripts/make_table.sh
- scripts/ragtagChromInfer.sh 12 additions, 0 deletionsscripts/ragtagChromInfer.sh
- scripts/rename_assemblies.py 119 additions, 0 deletionsscripts/rename_assemblies.py
- scripts/validate_fasta_file.py 159 additions, 0 deletionsscripts/validate_fasta_file.py
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